2PLQ Hydrolase date Apr 20, 2007
title Crystal Structure Of The Amidase From Geobacillus Pallidus R
authors S.W.Kimani, B.T.Sewell, V.B.Agarkar, M.F.Sayed, D.A.Cowan
compound source
Molecule: Aliphatic Amidase
Chain: A
Synonym: Acylamide Amidohydrolase
Ec: 3.5.1.4
Engineered: Yes
Organism_scientific: Geobacillus Pallidus
Organism_taxid: 33936
Strain: Rapc8
Gene: Amie, Ami
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector_type: Pet21a
Expression_system_plasmid: Pnh223
symmetry Space Group: P 42 3 2
R_factor 0.146 R_Free 0.177
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.398 130.398 130.398 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand
enzyme Hydrolase E.C.3.5.1.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe quaternary structure of the amidase from Geobacillus pallidus RAPc8 is revealed by its crystal packing., Agarkar VB, Kimani SW, Cowan DA, Sayed MF, Sewell BT, Acta Crystallograph Sect F Struct Biol Cryst Commun. 2006 Dec 1;62(Pt, 12):1174-8. Epub 2006 Nov 4. PMID:17142891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (2plq.pdb1.gz) 343 Kb
  • CSU: Contacts of Structural Units for 2PLQ
  • Likely Quarternary Molecular Structure file(s) for 2PLQ
  • Structure Factors (259 Kb)
  • Retrieve 2PLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PLQ from S2C, [Save to disk]
  • Re-refined 2plq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PLQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PLQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2plq] [2plq_A]
  • SWISS-PROT database: [Q9L543]
  • Domain organization of [AMIE_BACSP] by SWISSPFAM
  • Other resources with information on 2PLQ
  • Community annotation for 2PLQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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