2PLW Transferase date Apr 20, 2007
title Crystal Structure Of A Ribosomal Rna Methyltransferase, Puta Plasmodium Falciparum (Pf13_0052).
authors A.K.Wernimont, A.Hassanali, L.Lin, J.Lew, Y.Zhao, M.Ravichandran, M.Vedadi, I.Kozieradzki, M.Schapira, A.Bochkarev, A.M.Edwards, C.H.Arrowsmith, J.Weigelt, M.Sundstrom, R.Hui, W.Qiu, Structural Consortium (Sgc)
compound source
Molecule: Ribosomal Rna Methyltransferase, Putative
Chain: A
Fragment: Residues 70-270
Ec: 2.1.1.-
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 36329
Strain: 3d7
Gene: Pf13_0052
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15_mhl
symmetry Space Group: P 21 21 21
R_factor 0.202 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.595 59.798 71.295 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand SAM, SO4 enzyme Transferase E.C.2.1.1 BRENDA
Gene PF13
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (2plw.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2PLW
  • CSU: Contacts of Structural Units for 2PLW
  • Likely Quarternary Molecular Structure file(s) for 2PLW
  • Structure Factors (145 Kb)
  • Retrieve 2PLW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PLW from S2C, [Save to disk]
  • Re-refined 2plw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PLW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PLW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PLW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2plw] [2plw_A]
  • SWISS-PROT database: [Q8IEL9]
  • Domain organization of [Q8IEL9_PLAF7] by SWISSPFAM
  • Other resources with information on 2PLW
  • Community annotation for 2PLW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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