2PM1 Antimicrobial Protein date Apr 20, 2007
title Derivative Of Human Alpha-Defensin 1 (Hnp1)
authors J.Lubkowski, M.Pazgier, W.Lu
compound source
Molecule: Neutrophil Defensin 1 (Hnp-1) (Hp-1) (Hp1) (Defen 1);
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Def1
Gene: Defa1, Def1, Defa2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.151 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.811 38.811 31.560 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand DAB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (2pm1.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 2PM1
  • CSU: Contacts of Structural Units for 2PM1
  • Likely Quarternary Molecular Structure file(s) for 2PM1
  • Structure Factors (31 Kb)
  • Retrieve 2PM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PM1 from S2C, [Save to disk]
  • Re-refined 2pm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2PM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PM1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PM1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pm1] [2pm1_A]
  • SWISS-PROT database: [P59665]
  • Belongs to the defensin (defensin) family according to TCDB.
  • Domain organization of [DEF1_HUMAN] by SWISSPFAM
  • Domain found in 2PM1: [DEFSN ] by SMART
    • Other resources with information on 2PM1
  • Community annotation for 2PM1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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