2PMO	Transferase	date	Apr 23, 2007
title	Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
authors	A.Merckx, A.Echalier, M.Noble, J.Endicott
compound		source
Molecule: Serthr Protein Kinase Chain: X Engineered: Yes		Organism_scientific: Plasmodium Falciparum Organism_common: Malaria Parasite P. Falciparum Organism_taxid: 5833 Gene: Pfb0605w Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex
symmetry	Space Group: C 2 2 21	R_factor 0.230 R_Free 0.316
crystal cell	length a length b length c angle alpha angle beta angle gamma 73.061 82.473 138.717 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	HMD	enzyme
Gene Ontology	Chain Function Process Component X MAP kinase kinase activity
Primary reference	Structures of P. falciparum protein kinase 7 identify an activation motif and leads for inhibitor design., Merckx A, Echalier A, Langford K, Sicard A, Langsley G, Joore J, Doerig C, Noble M, Endicott J, Structure. 2008 Feb;16(2):228-38. PMID:18275814

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2pmo.pdb1.gz) 57 Kb LPC: Ligand-Protein Contacts for 2PMO CSU: Contacts of Structural Units for 2PMO Likely Quarternary Molecular Structure file(s) for 2PMO Structure Factors (149 Kb) Retrieve 2PMO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PMO from S2C, [Save to disk] Re-refined 2pmo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PMO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PMO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PMO, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pmo] [2pmo_X] SWISS-PROT database: [Q7YTF7] Domain organization of [Q7YTF7_PLAF7] by SWISSPFAM Domain found in 2PMO: [STYKc ] by SMART

Other resources with information on 2PMO

Community annotation for 2PMO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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