2PNF Oxidoreductase date Apr 24, 2007
title Structure Of Aquifex Aeolicus Fabg 3-Oxoacyl-(Acyl-Carrier P Reductase
authors Q.Mao, T.C.Umland
compound source
Molecule: 3-Oxoacyl-[Acyl-Carrier-Protein] Reductase
Chain: A, B
Synonym: 3-Ketoacyl- Acyl Carrier Protein Reductase
Ec: 1.1.1.100
Engineered: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 224324
Strain: Vf5
Gene: Fabg
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petduet-1
symmetry Space Group: P 21 21 2
R_factor 0.176 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.600 63.600 73.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 1PE, MES enzyme Oxidoreductase E.C.1.1.1.100 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (2pnf.pdb1.gz) 162 Kb
  • LPC: Ligand-Protein Contacts for 2PNF
  • CSU: Contacts of Structural Units for 2PNF
  • Likely Quarternary Molecular Structure file(s) for 2PNF
  • Structure Factors (485 Kb)
  • Retrieve 2PNF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PNF from S2C, [Save to disk]
  • Re-refined 2pnf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PNF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PNF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PNF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pnf_] [2pnf] [2pnf_A] [2pnf_B]
  • SWISS-PROT database: [O67610]
  • Domain organization of [FABG_AQUAE] by SWISSPFAM
  • Other resources with information on 2PNF
  • Community annotation for 2PNF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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