2POD Structural Genomics, Unknown Function date Apr 26, 2007
title Crystal Structure Of A Member Of Enolase Superfamily From Bu Pseudomallei K96243
authors Y.Patskovsky, J.Bonanno, J.M.Sauder, J.M.Gilmore, M.Iizuka, S.Ozy S.R.Wasserman, D.Smith, J.Gerlt, S.K.Burley, S.C.Almo, New York Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Mandelate Racemase Muconate Lactonizing Enzyme
Chain: A, B
Engineered: Yes
Organism_scientific: Burkholderia Pseudomallei
Organism_taxid: 272560
Strain: K96243
Gene: Bpss2072
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: I 4
R_factor 0.209 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.771 146.771 85.531 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.34 Å
ligand MSE, NA enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (2pod.pdb1.gz) 481 Kb
  • LPC: Ligand-Protein Contacts for 2POD
  • CSU: Contacts of Structural Units for 2POD
  • Likely Quarternary Molecular Structure file(s) for 2POD
  • Structure Factors (860 Kb)
  • Retrieve 2POD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2POD from S2C, [Save to disk]
  • Re-refined 2pod structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2POD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2POD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2POD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pod_B] [2pod] [2pod_A]
  • SWISS-PROT database: [Q63IJ7]
  • Domain organization of [Q63IJ7_BURPS] by SWISSPFAM
  • Domain found in 2POD: [MR_MLE ] by SMART
  • Other resources with information on 2POD
  • Community annotation for 2POD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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