2PRI	Transferase	date	Dec 11, 1998
title	Binding Of 2-Deoxy-Glucose-6-Phosphate To Glycogen Phosphory
authors	N.G.Oikonomakos, S.E.Zographos, L.N.Johnson, A.C.Papageorgiou, K.R.Acharya
compound		source
Molecule: Glycogen Phosphorylase B Chain: A Ec: 2.4.1.1		Organism_scientific: Oryctolagus Cuniculus Organism_common: Rabbit Organism_taxid: 9986 Tissue: Muscle
symmetry	Space Group: P 43 21 2	R_factor 0.192 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.500 128.500 116.300 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	D6G, PLP	enzyme	Transferase E.C.2.4.1.1 BRENDA
note	2PRI supersedes 1PRI
related structures	by homologous chain: 1C50, 1GFZ
Gene Ontology	Chain Function Process Component A
Primary reference	The binding of 2-deoxy-D-glucose 6-phosphate to glycogen phosphorylase b: kinetic and crystallographic studies., Oikonomakos NG, Zographos SE, Johnson LN, Papageorgiou AC, Acharya KR, J Mol Biol 1995 Dec 15;254(5):900-17. PMID:7500360

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk] Biological Unit Coordinates (2pri.pdb1.gz) 276 Kb LPC: Ligand-Protein Contacts for 2PRI CSU: Contacts of Structural Units for 2PRI Likely Quarternary Molecular Structure file(s) for 2PRI Retrieve 2PRI in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PRI from S2C, [Save to disk]

View 2PRI in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PRI

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PRI, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d2pria_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pri_A] [2pri] SWISS-PROT database: [P00489] Domain organization of [PYGM_RABIT] by SWISSPFAM

Other resources with information on 2PRI

Community annotation for 2PRI at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---