2PS2 Structural Genomics, Unknown Function date May 04, 2007
title Crystal Structure Of Putative Mandelate Racemasemuconate La Enzyme From Aspergillus Oryzae
authors A.A.Fedorov, R.Toro, E.V.Fedorov, J.M.Sauder, S.K.Burley, S.C.Alm York Sgx Research Center For Structural Genomics (Nysgxrc)
compound source
Molecule: Putative Mandelate Racemasemuconate Lactonizing
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Aspergillus Oryzae Rib40
Organism_taxid: 510516
Strain: Rib 40
Atcc: 42149
Gene: Ao090011000058
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 43 21 2
R_factor 0.194 R_Free 0.209
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.865 94.865 330.673 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (235 Kb) [Save to disk]
  • Biological Unit Coordinates (2ps2.pdb1.gz) 118 Kb
  • Biological Unit Coordinates (2ps2.pdb2.gz) 117 Kb
  • Biological Unit Coordinates (2ps2.pdb3.gz) 117 Kb
  • Biological Unit Coordinates (2ps2.pdb4.gz) 457 Kb
  • Biological Unit Coordinates (2ps2.pdb5.gz) 116 Kb
  • Biological Unit Coordinates (2ps2.pdb6.gz) 118 Kb
  • LPC: Ligand-Protein Contacts for 2PS2
  • CSU: Contacts of Structural Units for 2PS2
  • Likely Quarternary Molecular Structure file(s) for 2PS2
  • Structure Factors (1807 Kb)
  • Retrieve 2PS2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PS2 from S2C, [Save to disk]
  • Re-refined 2ps2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PS2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PS2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PS2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ps2_A] [2ps2_C] [2ps2_D] [2ps2] [2ps2_B]
  • SWISS-PROT database: [Q2U1E8]
  • Domain organization of [Q2U1E8_ASPOR] by SWISSPFAM
  • Domain found in 2PS2: [MR_MLE ] by SMART
  • Other resources with information on 2PS2
  • Community annotation for 2PS2 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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