2PUX	Hydrolase	date	May 09, 2007
title	Crystal Structure Of Murine Thrombin In Complex With The Ext Fragment Of Murine Par3
authors	A.Bah, Z.Chen, L.A.Bush-Pelc, F.S.Mathews, E.Di Cera
compound		source
Molecule: Thrombin Light Chain Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: F2, Cf2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Kidney Cells
Molecule: Thrombin Heavy Chain Chain: B Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: F2, Cf2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Kidney Cells
Molecule: Proteinase-Activated Receptor 3 Chain: C Synonym: Par-3, Thrombin Receptor-Like 2, Coagulation Facto Receptor-Like 2; Engineered: Yes		Synthetic: Yes Other_details: Midwest Biotech Inc.
symmetry	Space Group: C 1 2 1	R_factor 0.186 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 146.025 48.188 62.046 90.00 106.23 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Crystal structures of murine thrombin in complex with the extracellular fragments of murine protease-activated receptors PAR3 and PAR4., Bah A, Chen Z, Bush-Pelc LA, Mathews FS, Di Cera E, Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11603-8. Epub 2007 Jul 2. PMID:17606903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk] Biological Unit Coordinates (2pux.pdb1.gz) 58 Kb LPC: Ligand-Protein Contacts for 2PUX CSU: Contacts of Structural Units for 2PUX Likely Quarternary Molecular Structure file(s) for 2PUX Structure Factors (378 Kb) Retrieve 2PUX in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PUX from S2C, [Save to disk] Re-refined 2pux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PUX in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PUX

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PUX, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pux] [2pux_B] [2pux_C] [2pux_A] SWISS-PROT database: [O08675] [P19221] Domain organization of [PAR3_MOUSE] [THRB_MOUSE] by SWISSPFAM Domain found in 2PUX: [Tryp_SPc ] by SMART

Other resources with information on 2PUX

Community annotation for 2PUX at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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