2PV9	Hydrolase	date	May 09, 2007
title	Crystal Structure Of Murine Thrombin In Complex With The Ext Fragment Of Murine Par4
authors	A.Bah, Z.Chen, L.A.Bush-Pelc, F.S.Mathews, E.Di Cera
compound		source
Molecule: Thrombin Light Chain Chain: A Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: F2, Cf2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Kidney Cells
Molecule: Thrombin Heavy Chain Chain: B Engineered: Yes Mutation: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Gene: F2, Cf2 Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_cell: Kidney Cells
Molecule: Proteinase-Activated Receptor 4 Chain: C Synonym: Par-4, Thrombin Receptor-Like 3, Coagulation Facto Receptor-Like 3; Engineered: Yes		Synthetic: Yes Other_details: Midwest Biotech Inc.
symmetry	Space Group: P 65 2 2	R_factor 0.306 R_Free 0.319
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.153 111.153 179.707 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	NAG	enzyme
note	2PV9 is a representative structure
Gene Ontology	Chain Function Process Component A B C
Primary reference	Crystal structures of murine thrombin in complex with the extracellular fragments of murine protease-activated receptors PAR3 and PAR4., Bah A, Chen Z, Bush-Pelc LA, Mathews FS, Di Cera E, Proc Natl Acad Sci U S A. 2007 Jul 10;104(28):11603-8. Epub 2007 Jul 2. PMID:17606903

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk] Biological Unit Coordinates (2pv9.pdb1.gz) 55 Kb Biological Unit Coordinates (2pv9.pdb2.gz) 55 Kb LPC: Ligand-Protein Contacts for 2PV9 CSU: Contacts of Structural Units for 2PV9 Likely Quarternary Molecular Structure file(s) for 2PV9 Structure Factors (113 Kb) Retrieve 2PV9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PV9 from S2C, [Save to disk] Re-refined 2pv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2PV9 in 3D

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Visual 3D analysis of 2PV9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PV9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pv9_C] [2pv9_A] [2pv9] [2pv9_B] SWISS-PROT database: [O88634] [P19221] Domain organization of [PAR4_MOUSE] [THRB_MOUSE] by SWISSPFAM Domain found in 2PV9: [Tryp_SPc ] by SMART

Other resources with information on 2PV9

Community annotation for 2PV9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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