2PVQ Transferase date May 10, 2007
title Crystal Structure Of Ochrobactrum Anthropi Glutathione Trans Cys10ala Mutant With Glutathione Bound At The H-Site
authors N.Allocati, L.Federici, M.Masulli, B.Favaloro, C.Di Ilio
compound source
Molecule: Glutathione S-Transferase
Chain: A
Ec: 2.5.1.18
Engineered: Yes
Mutation: Yes
Organism_scientific: Ochrobactrum Anthropi
Organism_taxid: 529
Gene: Gst
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1 Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbtac1
symmetry Space Group: P 61 2 2
R_factor 0.198 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.373 58.373 214.023 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand GSH, SO4 enzyme Transferase E.C.2.5.1.18 BRENDA
note 2PVQ is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCysteine 10 is critical for the activity of Ochrobactrum anthropi glutathione transferase and its mutation to alanine causes the preferential binding of glutathione to the H-site., Allocati N, Federici L, Masulli M, Favaloro B, Di Ilio C, Proteins. 2007 Dec 12;. PMID:18076047
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (2pvq.pdb1.gz) 132 Kb
  • LPC: Ligand-Protein Contacts for 2PVQ
  • CSU: Contacts of Structural Units for 2PVQ
  • Likely Quarternary Molecular Structure file(s) for 2PVQ
  • Structure Factors (362 Kb)
  • Retrieve 2PVQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PVQ from S2C, [Save to disk]
  • Re-refined 2pvq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PVQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PVQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PVQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pvq_A] [2pvq]
  • SWISS-PROT database: [P81065]
  • Domain organization of [GST_OCHAN] by SWISSPFAM
  • Other resources with information on 2PVQ
  • Community annotation for 2PVQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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