2PVV Hydrolase date May 10, 2007
title Structure Of Human Glutamate Carboxypeptidase II (Gcpii) In With L-Serine-O-Sulfate
authors C.Barinka, J.Lubkowski
compound source
Molecule: Glutamate Carboxypeptidase 2
Chain: A
Fragment: Extracellular Domain
Synonym: Glutamate Carboxypeptidase II, Membrane Glutamate Carboxypeptidase, Mgcp, N-Acetylated-Alpha-Linked Acidic Di I, Naaladase I, Pteroylpoly-Gamma-Glutamate Carboxypeptidas Folylpoly-Gamma- Glutamate Carboxypeptidase, Fgcp, Folate H 1, Prostate- Specific Membrane Antigen, Psma, Psm;
Ec: 3.4.17.21
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Folh1, Folh, Naalad1, Psm, Psma
Expression_system: Drosophila Melanogaster
Expression_system_common: Fruit Fly
Expression_system_taxid: 7227
Expression_system_strain: Schneider'S S2 Cells
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmtbipv5-His A
symmetry Space Group: I 2 2 2
R_factor 0.174 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.617 130.220 158.975 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.11 Å
ligand CA, CL, MAN, NAG, OSE, ZN BindingDB enzyme Hydrolase E.C.3.4.17.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insight into the pharmacophore pocket of human glutamate carboxypeptidase II., Barinka C, Rovenska M, Mlcochova P, Hlouchova K, Plechanovova A, Majer P, Tsukamoto T, Slusher BS, Konvalinka J, Lubkowski J, J Med Chem. 2007 Jul 12;50(14):3267-73. Epub 2007 Jun 14. PMID:17567119
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (2pvv.pdb1.gz) 249 Kb
  • LPC: Ligand-Protein Contacts for 2PVV
  • CSU: Contacts of Structural Units for 2PVV
  • Likely Quarternary Molecular Structure file(s) for 2PVV
  • Structure Factors (359 Kb)
  • Retrieve 2PVV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PVV from S2C, [Save to disk]
  • Re-refined 2pvv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PVV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PVV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PVV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pvv] [2pvv_A]
  • SWISS-PROT database: [Q04609]
  • Domain organization of [FOLH1_HUMAN] by SWISSPFAM
  • Other resources with information on 2PVV
  • Community annotation for 2PVV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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