2PX7 Transferase date May 14, 2007
title Crystal Structure Of 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltransferase From Thermus Thermophilus Hb8
authors L.Chen, M.Tsukuda, A.Ebihara, A.Shinkai, S.Kuramitsu, S.Yokoyama, Q.Chen, Z.J.Liu, D.Lee, S.H.Chang, D.Nguyen, J.P.Rose, B.C.Wan Southeast Collaboratory For Structural Genomics (Secsg), Rik Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: 2-C-Methyl-D-Erythritol 4-Phosphate Cytidylyltran
Chain: A, B
Synonym: 4-Diphosphocytidyl-2c-Methyl-D-Erythritol Synthase Cytidylyltransferase, Mct;
Ec: 2.7.7.60
Engineered: Yes
Organism_scientific: Thermus Thermophilus Hb8
Organism_taxid: 300852
Strain: Hb8, Dsm 579
Atcc: 27634
Gene: Ispd, Ttha0171
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-19b
symmetry Space Group: P 61
R_factor 0.227 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.084 104.084 107.760 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.7.7.60 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (2px7.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 2PX7
  • Likely Quarternary Molecular Structure file(s) for 2PX7
  • Structure Factors (233 Kb)
  • Retrieve 2PX7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PX7 from S2C, [Save to disk]
  • Re-refined 2px7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PX7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PX7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PX7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2px7_A] [2px7] [2px7_B]
  • SWISS-PROT database: [Q5SLX2]
  • Domain organization of [ISPD_THET8] by SWISSPFAM
  • Other resources with information on 2PX7
  • Community annotation for 2PX7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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