2PX9 Protein Binding date May 14, 2007
title The Intrinsic Affinity Between E2 And The Cys Domain Of E1 I Ubiquitin-Like Modifications
authors J.H.Wang, W.D.Hu, S.Cai, B.Lee, J.Song, Y.Chen
compound source
Molecule: Sumo-Activating Enzyme Subunit 2
Chain: A
Synonym: Ubiquitin-Like 1- Activating Enzyme E1b, Anthracyc Associated Resistance Arx;
Ec: 6.3.2.-
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Sumo-Conjugating Enzyme Ubc9
Chain: B
Synonym: Sumo-Protein Ligase, Ubiquitin-Conjugating Enzyme Ubiquitin-Protein Ligase I, Ubiquitin Carrier Protein I, Ub Carrier Protein 9, P18;
Ec: 6.3.2.-
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
methodSolution NMR
ligand
enzyme Ligase E.C.6.3.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B
  • SUMO conjugating enzyme acti...


    • Primary referenceThe intrinsic affinity between E2 and the Cys domain of E1 in ubiquitin-like modifications., Wang J, Hu W, Cai S, Lee B, Song J, Chen Y, Mol Cell. 2007 Jul 20;27(2):228-37. PMID:17643372
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (2235 Kb) [Save to disk]
  • Biological Unit Coordinates (2px9.pdb1.gz) 111 Kb
  • CSU: Contacts of Structural Units for 2PX9
  • Original NMR restraints for 2PX9 from PDB
  • Retrieve 2PX9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PX9 from S2C, [Save to disk]
    • View 2PX9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2PX9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PX9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2px9] [2px9_A] [2px9_B]
  • SWISS-PROT database: [Q9UBT2] [P63279]
  • Belongs to the peroxisomal protein importer (ppi) family according to TCDB.
  • Domain organization of [SAE2_HUMAN] [UBC9_HUMAN] by SWISSPFAM
  • Domain found in 2PX9: [UBCc ] by SMART
    • Other resources with information on 2PX9
  • Community annotation for 2PX9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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