2PZ9 Transcription date May 17, 2007
title Crystal Structure Of Putative Transcriptional Regulator Sco4 Streptomyces Coelicolor
authors E.V.Filippova, M.Chruszcz, X.Xu, H.Zheng, M.Cymborowski, A.Savche A.Edwards, A.Joachimiak, W.Minor, Midwest Center For Structura Genomics (Mcsg)
compound source
Molecule: Putative Regulatory Protein
Chain: A
Engineered: Yes
Organism_scientific: Streptomyces Coelicolor A3(2)
Organism_taxid: 100226
Strain: A3(2), M145
Atcc: Baa-471
Gene: Sco4942, 2sck31.02c
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Gold Magic
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15tv Lic
symmetry Space Group: P 32 2 1
R_factor 0.213 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.960 66.960 104.345 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
ligand MSE, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIn situ proteolysis for protein crystallization and structure determination., Dong A, Xu X, Edwards AM, Chang C, Chruszcz M, Cuff M, Cymborowski M, Leo RD, Egorova O, Evdokimova E, Filippova E, Gu J, Guthrie J, Ignatchenko A, Joachimiak A, Klostermann N, Kim Y, Korniyenko Y, Minor W, Que Q, Savchenko A, Skarina T, Tan K, Yakunin A, Yee A, Yim V, Zhang R, Zheng H, Akutsu M, Arrowsmith C, Avvakumov GV, Bochkarev A, Dahlgren LG, Dhe-Paganon S, Dimov S, Dombrovski L, Finerty P Jr, Flodin S, Flores A, Graslund S, Hammerstrom M, Herman MD, Hong BS, Hui R, Johansson I, Liu Y, Nilsson M, Nedyalkova L, Nordlund P, Nyman T, Min J, Ouyang H, Park HW, Qi C, Rabeh W, Shen L, Shen Y, Sukumard D, Tempel W, Tong Y, Tresagues L, Vedadi M, Walker JR, Weigelt J, Welin M, Wu H, Xiao T, Zeng H, Zhu H, Nat Methods. 2007 Nov 4;. PMID:17982461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (2pz9.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 2PZ9
  • CSU: Contacts of Structural Units for 2PZ9
  • Likely Quarternary Molecular Structure file(s) for 2PZ9
  • Structure Factors (101 Kb)
  • Retrieve 2PZ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PZ9 from S2C, [Save to disk]
  • Re-refined 2pz9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PZ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PZ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PZ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pz9_A] [2pz9]
  • SWISS-PROT database: [Q9EWE9]
  • Domain organization of [Q9EWE9_STRCO] by SWISSPFAM
  • Other resources with information on 2PZ9
  • Community annotation for 2PZ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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