2PZE Hydrolase date May 17, 2007
title Minimal Human Cftr First Nucleotide Binding Domain As A Head Dimer
authors S.Atwell, K.Conners, S.Emtage, T.Gheyi, N.R.Glenn, J.Hendle, H.A.L F.Lu, L.A.Rodgers, R.Romero, J.M.Sauder, D.Smith, H.Tien, S.R.Was X.Zhao
compound source
Molecule: Cystic Fibrosis Transmembrane Conductance Regulat
Chain: A, B
Fragment: Cftr Nbd1 387-646(Del405-436)
Synonym: Cftr, Camp- Dependent Chloride Channel, Atp-Bindin Transporter Sub- Family C Member 7;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cftr, Abcc7
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26b
symmetry Space Group: P 21 21 21
R_factor 0.210 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.803 92.779 107.419 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ATP, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of a minimal human CFTR first nucleotide-binding domain as a monomer, head-to-tail homodimer, and pathogenic mutant., Atwell S, Brouillette CG, Conners K, Emtage S, Gheyi T, Guggino WB, Hendle J, Hunt JF, Lewis HA, Lu F, Protasevich II, Rodgers LA, Romero R, Wasserman SR, Weber PC, Wetmore D, Zhang FF, Zhao X, Protein Eng Des Sel. 2010 May;23(5):375-84. Epub 2010 Feb 11. PMID:20150177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk]
  • Biological Unit Coordinates (2pze.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (2pze.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 2PZE
  • CSU: Contacts of Structural Units for 2PZE
  • Likely Quarternary Molecular Structure file(s) for 2PZE
  • Structure Factors (344 Kb)
  • Retrieve 2PZE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PZE from S2C, [Save to disk]
  • Re-refined 2pze structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PZE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PZE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PZE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pze_B] [2pze] [2pze_A]
  • SWISS-PROT database: [P13569]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [CFTR_HUMAN] by SWISSPFAM
  • Domain found in 2PZE: [AAA ] by SMART
  • Other resources with information on 2PZE
  • Community annotation for 2PZE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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