2PZF Hydrolase date May 18, 2007
title Minimal Human Cftr First Nucleotide Binding Domain As A Head Dimer With Delta F508
authors S.Atwell, K.Conners, S.Emtage, T.Gheyi, N.R.Glenn, J.Hendle, H.A.L F.Lu, L.A.Rodgers, R.Romero, J.M.Sauder, D.Smith, H.Tien, S.R.Was X.Zhao
compound source
Molecule: Cystic Fibrosis Transmembrane Conductance Regulat
Chain: A, B
Fragment: Cftr Nbd1 387-646
Synonym: Cftr,Atp-Binding Cassette Sub-Family C Member 7,Ch Conductance-Controlling Atpase,Camp-Dependent Chloride Chan
Ec: 3.6.3.49
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cftr, Abcc7
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3) Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Modified Pet26b
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.152 92.662 106.471 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ATP, MG enzyme Hydrolase E.C.3.6.3.49 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of a minimal human CFTR first nucleotide-binding domain as a monomer, head-to-tail homodimer, and pathogenic mutant., Atwell S, Brouillette CG, Conners K, Emtage S, Gheyi T, Guggino WB, Hendle J, Hunt JF, Lewis HA, Lu F, Protasevich II, Rodgers LA, Romero R, Wasserman SR, Weber PC, Wetmore D, Zhang FF, Zhao X, Protein Eng Des Sel. 2010 May;23(5):375-84. Epub 2010 Feb 11. PMID:20150177
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (2pzf.pdb1.gz) 37 Kb
  • Biological Unit Coordinates (2pzf.pdb2.gz) 36 Kb
  • Biological Unit Coordinates (2pzf.pdb3.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 2PZF
  • CSU: Contacts of Structural Units for 2PZF
  • Likely Quarternary Molecular Structure file(s) for 2PZF
  • Structure Factors (216 Kb)
  • Retrieve 2PZF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2PZF from S2C, [Save to disk]
  • Re-refined 2pzf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2PZF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2PZF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2PZF, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2pzf_A] [2pzf_B] [2pzf]
  • SWISS-PROT database: [P13569]
  • Belongs to the atp-binding cassette (abc) superfamily according to TCDB.
  • Domain organization of [CFTR_HUMAN] by SWISSPFAM
  • Domain found in 2PZF: [AAA ] by SMART
  • Other resources with information on 2PZF
  • Community annotation for 2PZF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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