2PZY	Transferase	date	May 18, 2007
title	Structure Of Mk2 Complexed With Compound 76
authors	A.White, J.P.Wu, J.Wang, A.Abeywardane, D.Andersen, M.Emmanuel, E. D.R.Goldberg, M.A.Kashem, S.Lukas, W.Mao, L.Martin, T.Morwick, N. C.Pargellis, U.R.Patel, L.Patnaude, G.W.Peet, D.Skow, R.J.Snow, Y B.Werneburg
compound		source
Molecule: Map Kinase-Activated Protein Kinase 2 Chain: A, B, C, D Fragment: Mapk-Activated Protein Kinase 2 Synonym: Mapk-Activated Protein Kinase 2, Mapkap Kinase 2, Mk2; Ec: 2.7.11.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mapkapk2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid
symmetry	Space Group: P 63	R_factor 0.251 R_Free 0.313
crystal cell	length a length b length c angle alpha angle beta angle gamma 159.610 159.610 134.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	B18, STU BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	The discovery of carboline analogs as potent MAPKAP-K2 inhibitors., Wu JP, Wang J, Abeywardane A, Andersen D, Emmanuel M, Gautschi E, Goldberg DR, Kashem MA, Lukas S, Mao W, Martin L, Morwick T, Moss N, Pargellis C, Patel UR, Patnaude L, Peet GW, Skow D, Snow RJ, Ward Y, Werneburg B, White A, Bioorg Med Chem Lett. 2007 Aug 15;17(16):4664-9. Epub 2007 Jun 7. PMID:17576063

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (2pzy.pdb1.gz) 47 Kb Biological Unit Coordinates (2pzy.pdb2.gz) 46 Kb Biological Unit Coordinates (2pzy.pdb3.gz) 49 Kb Biological Unit Coordinates (2pzy.pdb4.gz) 46 Kb Biological Unit Coordinates (2pzy.pdb5.gz) 525 Kb LPC: Ligand-Protein Contacts for 2PZY CSU: Contacts of Structural Units for 2PZY Likely Quarternary Molecular Structure file(s) for 2PZY Retrieve 2PZY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2PZY from S2C, [Save to disk]

View 2PZY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2PZY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2PZY, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2pzy_D] [2pzy] [2pzy_C] [2pzy_B] [2pzy_A] SWISS-PROT database: [P49137] Domain organization of [MAPK2_HUMAN] by SWISSPFAM Domain found in 2PZY: [S_TKc ] by SMART

Other resources with information on 2PZY

Community annotation for 2PZY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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