2Q1J Hydrolase date May 24, 2007
title The Discovery Of Glycine And Related Amino Acid-Based Factor Xa Inhibitors
authors J.T.Kohrt, K.J.Filipski, W.L.Cody, C.F.Bigge, E.Zhang, B.C.Finzel
compound source
Molecule: Activated Factor Xa Heavy Chain (Ec 3.4.21.6)
Chain: A
Ec: 3.4.21.6
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Factor X Light Chain (Ec 3.4.21.6)
Chain: B
Fragment: Residues 128-178
Ec: 3.4.21.6

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.230 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.896 72.741 78.335 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, FXI enzyme Hydrolase E.C.3.4.21.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe discovery of glycine and related amino acid-based factor Xa inhibitors., Kohrt JT, Filipski KJ, Cody WL, Bigge CF, La F, Welch K, Dahring T, Bryant JW, Leonard D, Bolton G, Narasimhan L, Zhang E, Peterson JT, Haarer S, Sahasrabudhe V, Janiczek N, Desiraju S, Hena M, Fiakpui C, Saraswat N, Sharma R, Sun S, Maiti SN, Leadley R, Edmunds JJ, Bioorg Med Chem. 2006 Jul 1;14(13):4379-92. Epub 2006 Mar 10. PMID:16529937
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (2q1j.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 2Q1J
  • CSU: Contacts of Structural Units for 2Q1J
  • Likely Quarternary Molecular Structure file(s) for 2Q1J
  • Structure Factors (230 Kb)
  • Retrieve 2Q1J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q1J from S2C, [Save to disk]
  • Re-refined 2q1j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q1J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q1J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q1J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q1j_B] [2q1j_A] [2q1j]
  • SWISS-PROT database: [P00742]
  • Domain organization of [FA10_HUMAN] by SWISSPFAM
  • Domains found in 2Q1J: [EGF] [Tryp_SPc ] by SMART
  • Other resources with information on 2Q1J
  • Community annotation for 2Q1J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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