2Q5A	Isomerase Isomerase Inhibitor	date	May 31, 2007
title	Human Pin1 Bound To L-Peptide
authors	J.P.Noel, Y.Zhang
compound		source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase Nima-Interact Chain: A Synonym: Rotamase Pin1, Ppiase Pin1 Ec: 5.2.1.8 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Strain: Hela Gene: Pin1 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28
Molecule: Five Residue Peptide Chain: B Engineered: Yes		Synthetic: Yes Other_details: Synthetic Peptide
symmetry	Space Group: P 31 2 1	R_factor 0.232 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 68.842 68.842 79.513 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	16P, NAL, NH2, TPO, YCP	enzyme	Isomerase E.C.5.2.1.8 BRENDA
note	2Q5A supersedes 2ITI
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for high-affinity peptide inhibition of human Pin1., Zhang Y, Daum S, Wildemann D, Zhou XZ, Verdecia MA, Bowman ME, Lucke C, Hunter T, Lu KP, Fischer G, Noel JP, ACS Chem Biol. 2007 May 22;2(5):320-8. PMID:17518432

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk] Biological Unit Coordinates (2q5a.pdb1.gz) 29 Kb LPC: Ligand-Protein Contacts for 2Q5A CSU: Contacts of Structural Units for 2Q5A Likely Quarternary Molecular Structure file(s) for 2Q5A Structure Factors (485 Kb) Retrieve 2Q5A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Q5A from S2C, [Save to disk] Re-refined 2q5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Q5A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Q5A

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Q5A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2q5a] [2q5a_B] [2q5a_A] SWISS-PROT database: [Q13526] Domain organization of [PIN1_HUMAN] by SWISSPFAM Domain found in 2Q5A: [WW ] by SMART

Other resources with information on 2Q5A

Community annotation for 2Q5A at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---