2Q5Y Protein Transport date Jun 03, 2007
title Crystal Structure Of The C-Terminal Domain Of Hnup98
authors Y.Sun, H.C.Guo
compound source
Molecule: Nuclear Pore Complex Protein Nup98
Chain: A, C
Fragment: C-Terminal Domain, Residues 729-880
Synonym: Nucleoporin Nup98, 98 Kda Nucleoporin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Nup98
Expression_system: Escherichia Coli
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a

Molecule: Nuclear Pore Complex Protein Nup96
Chain: B, D
Fragment: Residues 881-887
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Is Naturally Present In Humans
symmetry Space Group: P 31 2 1
R_factor 0.228 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.301 90.301 97.648 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural constraints on autoprocessing of the human nucleoporin Nup98., Sun Y, Guo HC, Protein Sci. 2008 Mar;17(3):494-505. PMID:18287282
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (2q5y.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (2q5y.pdb2.gz) 26 Kb
  • CSU: Contacts of Structural Units for 2Q5Y
  • Likely Quarternary Molecular Structure file(s) for 2Q5Y
  • Structure Factors (417 Kb)
  • Retrieve 2Q5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q5Y from S2C, [Save to disk]
  • Re-refined 2q5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q5Y, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q5y_B] [2q5y] [2q5y_A] [2q5y_C] [2q5y_D]
  • SWISS-PROT database: [P52948]
  • Domain organization of [NUP98_HUMAN] by SWISSPFAM
  • Other resources with information on 2Q5Y
  • Community annotation for 2Q5Y at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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