2Q60 Transcription date Jun 04, 2007
title Crystal Structure Of The Ligand Binding Domain Of Polyandroc Misakiensis Rxr In Tetramer In Absence Of Ligand
authors F.Borel, A.De Groot, C.Juillan-Binard, E.De Rosny, V.Laudet, E.Pe Peyroula, J.C.Fontecilla-Camps, J.L.Ferrer
compound source
Molecule: Retinoid X Receptor
Chain: A, B, C, D
Fragment: Ligand Binding Domain
Engineered: Yes
Mutation: Yes
Organism_scientific: Polyandrocarpa Misakiensis
Organism_common: Ascidiacea
Organism_taxid: 7723
Gene: Pmrxr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.269 R_Free 0.325
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.260 96.120 151.720 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the ligand-binding domain of the retinoid X receptor from the ascidian polyandrocarpa misakiensis., Borel F, de Groot A, Juillan-Binard C, de Rosny E, Laudet V, Pebay-Peyroula E, Fontecilla-Camps JC, Ferrer JL, Proteins. 2009 Feb 1;74(2):538-42. PMID:19004016
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (2q60.pdb1.gz) 122 Kb
  • CSU: Contacts of Structural Units for 2Q60
  • Likely Quarternary Molecular Structure file(s) for 2Q60
  • Structure Factors (215 Kb)
  • Retrieve 2Q60 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q60 from S2C, [Save to disk]
  • Re-refined 2q60 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q60 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q60
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q60, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q60] [2q60_D] [2q60_C] [2q60_A] [2q60_B]
  • SWISS-PROT database: [Q9UAF1]
  • Domain organization of [Q9UAF1_POLMI] by SWISSPFAM
  • Domain found in 2Q60: [HOLI ] by SMART
  • Other resources with information on 2Q60
  • Community annotation for 2Q60 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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