2Q6J Transcription date Jun 05, 2007
title Crystal Structure Of Estrogen Receptor Alpha Complexed To A Substituted Ligand
authors H.Zhou, K.W.Nettles, J.B.Bruning, Y.Kim, A.Joachimiak, S.Sharma, K.E.Carlson, F.Stossi, B.S.Katzenellenbogen, G.L.Greene, J.A.Katzenellenbogen
compound source
Molecule: Estrogen Receptor
Chain: A, B
Fragment: Residues 298-554
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7

Molecule: Grip Peptide
Chain: C, D
Fragment: Residues 696-698
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Ncoa2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.227 R_Free 0.297
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.551 79.802 58.328 90.00 109.88 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand A48 enzyme
Primary referenceElemental isomerism: a boron-nitrogen surrogate for a carbon-carbon double bond increases the chemical diversity of estrogen receptor ligands., Zhou HB, Nettles KW, Bruning JB, Kim Y, Joachimiak A, Sharma S, Carlson KE, Stossi F, Katzenellenbogen BS, Greene GL, Katzenellenbogen JA, Chem Biol. 2007 Jun;14(6):659-69. PMID:17584613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (2q6j.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 2Q6J
  • CSU: Contacts of Structural Units for 2Q6J
  • Likely Quarternary Molecular Structure file(s) for 2Q6J
  • Structure Factors (99 Kb)
  • Retrieve 2Q6J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2Q6J from S2C, [Save to disk]
  • Re-refined 2q6j structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2Q6J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2Q6J
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2Q6J, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2q6j] [2q6j_B] [2q6j_D] [2q6j_C] [2q6j_A]
  • SWISS-PROT database: [P03372] [Q61026] [Q8BN74]
  • Domain organization of [ESR1_HUMAN] [NCOA2_MOUSE] [Q8BN74_MOUSE] by SWISSPFAM
  • Domain found in 2Q6J: [HOLI ] by SMART
  • Other resources with information on 2Q6J
  • Community annotation for 2Q6J at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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