2Q6V	Transferase	date	Jun 05, 2007
title	Crystal Structure Of Gumk In Complex With Udp
authors	M.Barreras
compound		source
Molecule: Glucuronosyltransferase Gumk Chain: A Ec: 2.4.1.17 Engineered: Yes		Organism_scientific: Xanthomonas Campestris Pv. Campestris Gene: Gumk Expression_system: Escherichia Coli Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 65 2 2	R_factor 0.175 R_Free 0.216
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.210 121.210 170.724 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.28 Å
ligand	UDP	enzyme	Transferase E.C.2.4.1.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structure and mechanism of GumK, a membrane-associated glucuronosyltransferase., Barreras M, Salinas SR, Abdian PL, Kampel MA, Ielpi L, J Biol Chem. 2008 Sep 5;283(36):25027-35. Epub 2008 Jul 2. PMID:18596046

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk] Biological Unit Coordinates (2q6v.pdb1.gz) 67 Kb LPC: Ligand-Protein Contacts for 2Q6V CSU: Contacts of Structural Units for 2Q6V Likely Quarternary Molecular Structure file(s) for 2Q6V Structure Factors (264 Kb) Retrieve 2Q6V in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2Q6V from S2C, [Save to disk] Re-refined 2q6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2Q6V in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2Q6V

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2Q6V, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2q6v] [2q6v_A] SWISS-PROT database: [Q8GCH2] Domain organization of [Q8GCH2_XANCP] by SWISSPFAM

Other resources with information on 2Q6V

Community annotation for 2Q6V at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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