2QG1 Signaling Protein date Jun 28, 2007
title Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
authors E.Papagrigoriou, E.Salah, C.Phillips, P.Savitsky, P.Boisguerin, H.Oschkinat, C.Gileadi, X.Yang, J.M.Elkins, E.Ugochukwu, G.Bunko J.Uppenberg, M.Sundstrom, C.H.Arrowsmith, J.Weigelt, A.Edwards, Delft, D.Doyle, Structural Genomics Consortium (Sgc)
compound source
Molecule: Multiple Pdz Domain Protein
Chain: A
Fragment: 11th Pdz Domain
Synonym: Multi-Pdz Domain Protein 1, Mpdz
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mpdz, Mupp1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic28-Bsa4
symmetry Space Group: P 21 21 21
R_factor 0.169 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.409 36.919 63.609 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand EDO enzyme
note 2QG1 is a representative structure
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (2qg1.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 2QG1
  • CSU: Contacts of Structural Units for 2QG1
  • Likely Quarternary Molecular Structure file(s) for 2QG1
  • Structure Factors (221 Kb)
  • Retrieve 2QG1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QG1 from S2C, [Save to disk]
  • Re-refined 2qg1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QG1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QG1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QG1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qg1] [2qg1_A]
  • SWISS-PROT database: [O75970]
  • Domain organization of [MPDZ_HUMAN] by SWISSPFAM
  • Domain found in 2QG1: [PDZ ] by SMART
    • Other resources with information on 2QG1
  • Community annotation for 2QG1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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