2QH6 Transcription date Jun 29, 2007
title Crystal Structure Of The Estrogen Receptor Alpha Ligand Bind Complexed With An Oxabicyclic Diarylethylene Compound
authors K.W.Nettles, J.B.Bruning, J.Nowak, S.K.Sharma, J.B.Hahm, Y.Shi, K. R.B.Hochberg, H.Zhou, J.A.Katzenellenbogen, B.S.Katzenellenbog A.Joachmiak, G.L.Greene
compound source
Molecule: Estrogen Receptor
Chain: A, B
Fragment: Steroid-Binding Region, Residues 298-554
Synonym: Er, Estradiol Receptor, Er-Alpha
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Esr1, Esr, Nr3a1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3) Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7

Molecule: Nuclear Receptor Coactivator 2
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.765 81.718 58.310 90.00 109.90 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand ODE enzyme
Primary referenceNFkappaB selectivity of estrogen receptor ligands revealed by comparative crystallographic analyses., Nettles KW, Bruning JB, Gil G, Nowak J, Sharma SK, Hahm JB, Kulp K, Hochberg RB, Zhou H, Katzenellenbogen JA, Katzenellenbogen BS, Kim Y, Joachmiak A, Greene GL, Nat Chem Biol. 2008 Apr;4(4):241-7. Epub 2008 Mar 16. PMID:18344977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (2qh6.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 2QH6
  • CSU: Contacts of Structural Units for 2QH6
  • Likely Quarternary Molecular Structure file(s) for 2QH6
  • Structure Factors (102 Kb)
  • Retrieve 2QH6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QH6 from S2C, [Save to disk]
  • Re-refined 2qh6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QH6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QH6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QH6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qh6] [2qh6_C] [2qh6_A] [2qh6_B] [2qh6_D]
  • SWISS-PROT database: [P03372] [Q61026]
  • Domain organization of [ESR1_HUMAN] [NCOA2_MOUSE] by SWISSPFAM
  • Domain found in 2QH6: [HOLI ] by SMART
  • Other resources with information on 2QH6
  • Community annotation for 2QH6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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