2QIM Allergen date Jul 05, 2007
title Crystal Structure Of Pathogenesis-Related Protein Llpr-10.2b Yellow Lupine In Complex With Cytokinin
authors H.C.Fernandes, O.Pasternak, G.Bujacz, A.Bujacz, M.M.Sikorski, M.J
compound source
Molecule: Pr10.2b
Chain: A
Synonym: Class 10 Plant Pathogenesis-Related Protein
Engineered: Yes
Organism_scientific: Lupinus Luteus
Organism_common: Yellow Lupine
Organism_taxid: 3873
Gene: Pr10.2b, Ypr10.2b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3a
symmetry Space Group: P 65
R_factor 0.147 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
73.822 73.822 67.212 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.35 Å
ligand CA, GOL, ZEA enzyme
note 2QIM is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein phosphatase inhibito...


  • Primary referenceLupinus luteus pathogenesis-related protein as a reservoir for cytokinin., Fernandes H, Pasternak O, Bujacz G, Bujacz A, Sikorski MM, Jaskolski M, J Mol Biol. 2008 May 16;378(5):1040-51. Epub 2008 Mar 19. PMID:18406424
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (2qim.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 2QIM
  • CSU: Contacts of Structural Units for 2QIM
  • Likely Quarternary Molecular Structure file(s) for 2QIM
  • Structure Factors (307 Kb)
  • Retrieve 2QIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QIM from S2C, [Save to disk]
  • Re-refined 2qim structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QIM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QIM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qim] [2qim_A]
  • SWISS-PROT database: [Q9LLQ2]
  • Domain organization of [Q9LLQ2_LUPLU] by SWISSPFAM
  • Other resources with information on 2QIM
  • Community annotation for 2QIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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