2QJ9 Cytokine Receptor date Jul 06, 2007
title Crystal Structure Analysis Of Bmp-2 In Complex With Bmpr-Ia
authors A.Kotzsch, T.D.Mueller
compound source
Molecule: Bone Morphogenetic Protein 2
Chain: B, A
Fragment: Mature Part (Residues 283-396)
Synonym: Bmp-2, Bmp-2a
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp2, Bmp2a
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a

Molecule: Bone Morphogenetic Protein Receptor Type Ia
Chain: D, C
Fragment: Extracellular Domain (Residues 24-152)
Synonym: Serinethreonine-Protein Kinase Receptor R5, Skr5, Receptor-Like Kinase 3, Alk-3, Cd292 Antigen;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmpr1a, Acvrlk3, Alk3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet32a
symmetry Space Group: P 65
R_factor 0.197 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
105.961 105.961 96.789 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.44 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceStructure analysis of BMP-2 type I receptor complexes reveals a mechanism of receptor inactivation in juvenile polyposis syndrome., Kotzsch A, Nickel J, Seher A, Heinecke K, van Geersdaele L, Herrmann T, Sebald W, Mueller TD, J Biol Chem. 2007 Dec 26;. PMID:18160401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (2qj9.pdb1.gz) 64 Kb
  • CSU: Contacts of Structural Units for 2QJ9
  • Likely Quarternary Molecular Structure file(s) for 2QJ9
  • Structure Factors (163 Kb)
  • Retrieve 2QJ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QJ9 from S2C, [Save to disk]
  • Re-refined 2qj9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QJ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QJ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QJ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qj9] [2qj9_D] [2qj9_B] [2qj9_C] [2qj9_A]
  • SWISS-PROT database: [P12643] [P36894]
  • Domain organization of [BMP2_HUMAN] [BMR1A_HUMAN] by SWISSPFAM
  • Domain found in 2QJ9: [TGFB ] by SMART
  • Other resources with information on 2QJ9
  • Community annotation for 2QJ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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