2QR0 Immune System date Jul 27, 2007
title Structure Of Vegf Complexed To A Fab Containing Tyr And Ser Cdrs
authors C.Wiesmann
compound source
Molecule: Fab-Fragment Light Chain
Chain: A, E, G, K, M, Q, S, W
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Fab-Fragment Heavy Chain
Chain: B, F, H, L, N, R, T, X

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Vascular Endothelial Growth Factor A
Chain: C, D, I, J, O, P, U, V
Synonym: Vegf-A; Vascular Permeability Factor; Vpf

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.291 R_Free 0.312
crystal
cell
length a length b length c angle alpha angle beta angle gamma
154.453 90.218 205.558 90.00 90.85 90.00
method X-Ray Diffractionresolution 3.50 Å
Gene
Ontology
ChainFunctionProcessComponent
O, J, P, V, C, D, I, U


Primary referenceHigh-throughput generation of synthetic antibodies from highly functional minimalist phage-displayed libraries., Fellouse FA, Esaki K, Birtalan S, Raptis D, Cancasci VJ, Koide A, Jhurani P, Vasser M, Wiesmann C, Kossiakoff AA, Koide S, Sidhu SS, J Mol Biol. 2007 Nov 2;373(4):924-40. Epub 2007 Aug 19. PMID:17825836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (664 Kb) [Save to disk]
  • Biological Unit Coordinates (2qr0.pdb1.gz) 172 Kb
  • Biological Unit Coordinates (2qr0.pdb2.gz) 172 Kb
  • Biological Unit Coordinates (2qr0.pdb3.gz) 173 Kb
  • Biological Unit Coordinates (2qr0.pdb4.gz) 173 Kb
  • CSU: Contacts of Structural Units for 2QR0
  • Likely Quarternary Molecular Structure file(s) for 2QR0
  • Structure Factors (541 Kb)
  • Retrieve 2QR0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QR0 from S2C, [Save to disk]
  • Re-refined 2qr0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QR0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QR0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QR0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qr0_Q] [2qr0_H] [2qr0_B] [2qr0] [2qr0_M] [2qr0_E] [2qr0_N] [2qr0_P] [2qr0_K] [2qr0_G] [2qr0_A] [2qr0_T] [2qr0_R] [2qr0_L] [2qr0_V] [2qr0_D] [2qr0_O] [2qr0_S] [2qr0_X] [2qr0_C] [2qr0_U] [2qr0_I] [2qr0_J] [2qr0_W] [2qr0_F]
  • SWISS-PROT database: [P01857] [P15692]
  • Domain organization of [IGHG1_HUMAN] [VEGFA_HUMAN] by SWISSPFAM
  • Domains found in 2QR0: [IG_like] [IGv] [PDGF ] by SMART
  • Other resources with information on 2QR0
  • Community annotation for 2QR0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science