2QS6 Structure of a Hoogsteen antiparallel duplex with extra-helical thymines date
authors Pous, J., Urpi, L., Subirana, J.A., Gouyette, C., Navaza, J., Campos, J.L.
compound source
symmetry
R_factor
R_Free .28950
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.08
Primary referenceStabilization by extra-helical thymines of a DNA duplex with Hoogsteen base pairs., Pous J, Urpi L, Subirana JA, Gouyette C, Navaza J, Campos JL, J Am Chem Soc. 2008 May 28;130(21):6755-60. Epub 2008 May 1. PMID:18447354
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (2qs6.pdb1.gz) 7 Kb
  • Biological Unit Coordinates (2qs6.pdb2.gz) 7 Kb
  • Biological Unit Coordinates (2qs6.pdb3.gz) 6 Kb
  • Biological Unit Coordinates (2qs6.pdb4.gz) 7 Kb
  • Biological Unit Coordinates (2qs6.pdb5.gz) 6 Kb
  • Biological Unit Coordinates (2qs6.pdb6.gz) 7 Kb
  • Biological Unit Coordinates (2qs6.pdb7.gz) 6 Kb
  • CSU: Contacts of Structural Units for 2QS6
  • Likely Quarternary Molecular Structure file(s) for 2QS6
  • Structure Factors (55 Kb)
  • Retrieve 2QS6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QS6 from S2C, [Save to disk]
  • Re-refined 2qs6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2QS6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2QS6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QS6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qs6_H] [2qs6_G] [2qs6] [2qs6_B] [2qs6_K] [2qs6_F] [2qs6_N] [2qs6_M] [2qs6_J] [2qs6_D] [2qs6_C] [2qs6_A] [2qs6_E] [2qs6_I] [2qs6_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2QS6
  • Community annotation for 2QS6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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