2QSH Dna Binding Protein Dna date Jul 31, 2007
title Crystal Structure Of Rad4-Rad23 Bound To A Mismatch Dna
authors J.H.Min, N.P.Pavletich
compound source
Molecule: Top Strand Of The Mismatch Dna
Chain: W
Engineered: Yes
Synthetic: Yes

Molecule: Bottom Strand Of The Mismatch Dna
Chain: Y
Engineered: Yes

Synthetic: Yes

Molecule: Dna Repair Protein Rad4
Chain: A
Synonym: Rad4
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rad4
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Hi5
Expression_system_organ: Eggs
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac Dual

Molecule: Uv Excision Repair Protein Rad23
Chain: X
Synonym: Rad23
Engineered: Yes

Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Rad23
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: Hi5
Expression_system_organ: Eggs
Expression_system_vector_type: Baculovirus
Expression_system_vector: Pfastbac Dual
symmetry Space Group: P 41 21 2
R_factor 0.209 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.644 79.644 403.967 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.81 Å
Gene
Ontology
ChainFunctionProcessComponent
A


X


Primary referenceRecognition of DNA damage by the Rad4 nucleotide excision repair protein., Min JH, Pavletich NP, Nature. 2007 Sep 19;. PMID:17882165
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (2qsh.pdb1.gz) 108 Kb
  • CSU: Contacts of Structural Units for 2QSH
  • Likely Quarternary Molecular Structure file(s) for 2QSH
  • Structure Factors (281 Kb)
  • Retrieve 2QSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2QSH from S2C, [Save to disk]
  • Re-refined 2qsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2QSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2QSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2QSH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2qsh_W] [2qsh_X] [2qsh_A] [2qsh_Y] [2qsh]
  • SWISS-PROT database: [P32628] [P14736]
  • Domain organization of [RAD23_YEAST] [RAD4_YEAST] by SWISSPFAM
  • Domains found in 2QSH: [BHD_1] [BHD_2] [BHD_3] [STI1] [TGc] [UBA ] by SMART
  • Other resources with information on 2QSH
  • Community annotation for 2QSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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