2R0W	Immune System	date	Aug 21, 2007
title	Pfa2 Fab Complexed With Abeta1-8
authors	A.S.Gardberg, C.Dealwis
compound		source
Molecule: Igg2a Fab Fragment Light Chain Chain: L Fragment: Light Chain		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Other_details: Hybridoma
Molecule: Igg2a Fab Fragment Heavy Chain, Fd Portion Chain: H Fragment: Fd Portion Of Heavy Chain		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Other_details: Hybridoma
Molecule: Amyloid Beta Peptide Fragment Chain: Q Fragment: Octapeptide Synonym: Amyloid Beta A4 Protein, Fragment Engineered: Yes		Synthetic: Yes
symmetry	Space Group: P 1	R_factor 0.208 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.793 43.327 58.456 92.51 94.96 90.55
method	X-Ray Diffraction	resolution	2.50 Å
ligand	NA, YCM	enzyme
Gene Ontology	Chain Function Process Component L
Primary reference	Molecular basis for passive immunotherapy of Alzheimer's disease., Gardberg AS, Dice LT, Ou S, Rich RL, Helmbrecht E, Ko J, Wetzel R, Myszka DG, Patterson PH, Dealwis C, Proc Natl Acad Sci U S A. 2007 Oct 2;104(40):15659-64. Epub 2007 Sep 25. PMID:17895381

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk] Biological Unit Coordinates (2r0w.pdb1.gz) 70 Kb LPC: Ligand-Protein Contacts for 2R0W CSU: Contacts of Structural Units for 2R0W Likely Quarternary Molecular Structure file(s) for 2R0W Structure Factors (106 Kb) Retrieve 2R0W in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R0W from S2C, [Save to disk] Re-refined 2r0w structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R0W in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R0W

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R0W, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r0w_Q] [2r0w] [2r0w_H] [2r0w_L] SWISS-PROT database: [P05067] [P01863] [P01631] [Q811U5] Belongs to the amyloid β-protein peptide (aβpp) family according to TCDB. Domain organization of [A4_HUMAN] [GCAA_MOUSE] [KV2A7_MOUSE] [Q811U5_MOUSE] by SWISSPFAM Domains found in 2R0W: [IG_like] [IGv ] by SMART

Other resources with information on 2R0W

Community annotation for 2R0W at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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