2R1C Rna Binding Protein date Aug 22, 2007
title Coordinates Of The Thermus Thermophilus Ribosome Binding Fac (Rbfa) Homology Model As Fitted Into The Cryo-Em Map Of A 3 Complex
authors P.P.Datta, D.N.Wilson, M.Kawazoe, N.K.Swami, T.Kaminishi, M.R.Sha T.M.Booth, C.Takemoto, P.Fucini, S.Yokoyama, R.K.Agrawal
compound source
Molecule: Ribosome-Binding Factor A
Chain: A
Synonym: Rbfa, Ttha0907
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 300852
Strain: Hb8
Gene: Ttha0907
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 12.50 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural aspects of RbfA action during small ribosomal subunit assembly., Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, Sharma MR, Booth TM, Takemoto C, Fucini P, Yokoyama S, Agrawal RK, Mol Cell. 2007 Nov 9;28(3):434-45. PMID:17996707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (2r1c.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 2R1C
  • Likely Quarternary Molecular Structure file(s) for 2R1C
  • Retrieve 2R1C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R1C from S2C, [Save to disk]
    • View 2R1C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2R1C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R1C, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r1c] [2r1c_A]
  • SWISS-PROT database: [Q5SJV1]
  • Domain organization of [Q5SJV1_THET8] by SWISSPFAM
    • Other resources with information on 2R1C
  • Community annotation for 2R1C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science