2R3M Transferase date Aug 29, 2007
title Crystal Structure Of Cyclin-Dependent Kinase 2 With Inhibitor
authors T.O.Fischmann, A.W.Hruza, V.M.Madison, J.S.Duca
compound source
Molecule: Cell Division Protein Kinase 2
Chain: A
Synonym: P33 Protein Kinase
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk2
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_strain: Sf9
symmetry Space Group: P 21 21 21
R_factor 0.185 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.240 70.870 72.170 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ACE, CSD, SCX enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-guided discovery of cyclin-dependent kinase inhibitors., Fischmann TO, Hruza A, Duca JS, Ramanathan L, Mayhood T, Windsor WT, Le HV, Guzi TJ, Dwyer MP, Paruch K, Doll RJ, Lees E, Parry D, Seghezzi W, Madison V, Biopolymers. 2007 Oct 15;. PMID:17937404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (2r3m.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 2R3M
  • CSU: Contacts of Structural Units for 2R3M
  • Likely Quarternary Molecular Structure file(s) for 2R3M
  • Structure Factors (214 Kb)
  • Retrieve 2R3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R3M from S2C, [Save to disk]
  • Re-refined 2r3m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2R3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2R3M
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R3M, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r3m] [2r3m_A]
  • SWISS-PROT database: [P24941]
  • Domain organization of [CDK2_HUMAN] by SWISSPFAM
  • Domain found in 2R3M: [S_TKc ] by SMART
  • Other resources with information on 2R3M
  • Community annotation for 2R3M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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