2R5A	Transcription	date	Sep 03, 2007
title	Crystal Structure Of The Two Mbt Repeats From Sex-Comb On Mi In Complex With Methyl Lysine
authors	C.Grimm, U.Steuerwald, C.W.Mueller
compound		source
Molecule: Polycomb Protein Scm Chain: A Fragment: Unp Residues:175-435 Synonym: Sex Comb On Midleg Protein Engineered: Yes Mutation: Yes		Organism_scientific: Drosophila Melanogaster Organism_common: Fruit Fly Organism_taxid: 7227 Gene: Scm Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 43 21 2	R_factor 0.173 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.030 83.030 75.790 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	MLZ	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural and functional analyses of methyl-lysine binding by the malignant brain tumour repeat protein Sex comb on midleg., Grimm C, de Ayala Alonso AG, Rybin V, Steuerwald U, Ly-Hartig N, Fischle W, Muller J, Muller CW, EMBO Rep. 2007 Oct 12;. PMID:17932512

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (44 Kb) [Save to disk] Biological Unit Coordinates (2r5a.pdb1.gz) 37 Kb LPC: Ligand-Protein Contacts for 2R5A CSU: Contacts of Structural Units for 2R5A Likely Quarternary Molecular Structure file(s) for 2R5A Structure Factors (174 Kb) Retrieve 2R5A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2R5A from S2C, [Save to disk] Re-refined 2r5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2R5A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2R5A

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2R5A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2r5a] [2r5a_A] SWISS-PROT database: [Q9VHA0] Domain organization of [SCM_DROME] by SWISSPFAM Domain found in 2R5A: [MBT ] by SMART

Other resources with information on 2R5A

Community annotation for 2R5A at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---