2R88 Transport Protein date Sep 10, 2007
title Crystal Structure Of The Long-Chain Fatty Acid Transporter F Delta S3 Kink
authors E.M.Hearn, D.R.Patel, B.W.Lepore, M.Indic, B.Van Den Berg
compound source
Molecule: Long-Chain Fatty Acid Transport Protein
Chain: A, B
Synonym: Outer Membrane Fadl Protein, Outer Membrane Flp Pr
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Fadl, Ttr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad22
symmetry Space Group: C 2 2 21
R_factor 0.262 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.327 91.370 267.317 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • long-chain fatty acid transp...
  • ligand-gated channel activit...


    • Primary referenceTransmembrane passage of hydrophobic compounds through a protein channel wall., Hearn EM, Patel DR, Lepore BW, Indic M, van den Berg B, Nature. 2009 Feb 1. PMID:19182779
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (2r88.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (2r88.pdb2.gz) 57 Kb
  • CSU: Contacts of Structural Units for 2R88
  • Likely Quarternary Molecular Structure file(s) for 2R88
  • Structure Factors (275 Kb)
  • Retrieve 2R88 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2R88 from S2C, [Save to disk]
  • Re-refined 2r88 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2R88 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2R88
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2R88, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2r88] [2r88_A] [2r88_B]
  • SWISS-PROT database: [P10384]
  • Belongs to the fadl outer membrane protein (fadl) family according to TCDB.
  • Domain organization of [FADL_ECOLI] by SWISSPFAM
    • Other resources with information on 2R88
  • Community annotation for 2R88 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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