2RC2	Oxidoreductase	date	Sep 19, 2007
title	Cytochrome C Peroxidase W191g In Complex With 1-Methyl-2-Vin Pyridinium
authors	A.P.Graves, S.E.Boyce, B.K.Shoichet
compound		source
Molecule: Cytochrome C Peroxidase Chain: X Ec: 1.11.1.5 Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_taxid: 307796 Strain: Yjm789 Gene: Ccp1, Ccp, Cpo Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pt7ccp
symmetry	Space Group: P 21 21 21	R_factor 0.146 R_Free 0.167
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.039 75.511 106.928 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	286, HEM	enzyme	Oxidoreductase E.C.1.11.1.5 BRENDA
Gene Ontology	Chain Function Process Component X
Primary reference	Rescoring docking hit lists for model cavity sites: predictions and experimental testing., Graves AP, Shivakumar DM, Boyce SE, Jacobson MP, Case DA, Shoichet BK, J Mol Biol. 2008 Mar 28;377(3):914-34. Epub 2008 Jan 30. PMID:18280498

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (2rc2.pdb1.gz) 112 Kb LPC: Ligand-Protein Contacts for 2RC2 CSU: Contacts of Structural Units for 2RC2 Likely Quarternary Molecular Structure file(s) for 2RC2 Structure Factors (472 Kb) Retrieve 2RC2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RC2 from S2C, [Save to disk] Re-refined 2rc2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2RC2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RC2

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RC2, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2rc2] [2rc2_X] SWISS-PROT database: [P00431] Domain organization of [CCPR_YEAST] by SWISSPFAM

Other resources with information on 2RC2

Community annotation for 2RC2 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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