2RCY Oxidoreductase date Sep 20, 2007
title Crystal Structure Of Plasmodium Falciparum Pyrroline Carboxy Reductase (Mal13p1.284) With Nadp Bound
authors A.K.Wernimont, J.Lew, Y.H.Lin, H.Ren, X.Sun, C.Khuu, A.Hassanali, G Y.Zhao, I.Kozieradzki, M.Schapira, A.Bochkarev, J.Weigelt, M.Sun C.H.Arrowsmith, A.M.Edwards, R.Hui, J.D.Artz, M.Amani, Structura Genomics Consortium (Sgc)
compound source
Molecule: Pyrroline Carboxylate Reductase
Chain: A, B, C, D, E
Ec: 1.5.1.2
Engineered: Yes
Organism_scientific: Plasmodium Falciparum
Organism_taxid: 36329
Strain: 3d7
Gene: Mal13p1.284
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P15-Tev-Lic
symmetry Space Group: C 1 2 1
R_factor 0.245 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
160.207 113.741 82.651 90.00 105.71 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL, MG, MSE, NAP enzyme Oxidoreductase E.C.1.5.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (212 Kb) [Save to disk]
  • Biological Unit Coordinates (2rcy.pdb1.gz) 398 Kb
  • LPC: Ligand-Protein Contacts for 2RCY
  • CSU: Contacts of Structural Units for 2RCY
  • Likely Quarternary Molecular Structure file(s) for 2RCY
  • Structure Factors (1104 Kb)
  • Retrieve 2RCY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RCY from S2C, [Save to disk]
  • Re-refined 2rcy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RCY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RCY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RCY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rcy_B] [2rcy] [2rcy_A] [2rcy_C] [2rcy_D] [2rcy_E]
  • SWISS-PROT database: [Q8IDC6]
  • Domain organization of [Q8IDC6_PLAF7] by SWISSPFAM
  • Other resources with information on 2RCY
  • Community annotation for 2RCY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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