2RD1 Structural Genomics, Unknown Function date Sep 20, 2007
title X-Ray Structure Of The Protein Q7cqi7. Northeast Structural Consortium Target Str87a
authors A.P.Kuzin, M.Su, J.Seetharaman, S.M.Vorobiev, D.Wang, Y.Fang, L.Ow C.Mao, R.Xiao, J.Liu, M.C.Baran, T.B.Acton, B.Rost, G.T.Montelion J.F.Hunt, L.Tong, Northeast Structural Genomics Consortium (N
compound source
Molecule: Putative Outer Membrane Lipoprotein
Chain: A, B, C
Fragment: Residues 20-73
Engineered: Yes
 Organism_scientific: Salmonella Typhimurium Lt2
Organism_taxid: 99287
Strain: Lt2, Sgsc1412
Atcc: 700720
Gene: Stm1585
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.207 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.696 57.696 100.420 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (2rd1.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (2rd1.pdb2.gz) 11 Kb
  • Biological Unit Coordinates (2rd1.pdb3.gz) 10 Kb
  • Biological Unit Coordinates (2rd1.pdb4.gz) 20 Kb
  • Biological Unit Coordinates (2rd1.pdb5.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 2RD1
  • CSU: Contacts of Structural Units for 2RD1
  • Likely Quarternary Molecular Structure file(s) for 2RD1
  • Structure Factors (183 Kb)
  • Retrieve 2RD1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RD1 from S2C, [Save to disk]
  • Re-refined 2rd1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2RD1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RD1
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RD1, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rd1] [2rd1_C] [2rd1_A] [2rd1_B]
  • SWISS-PROT database: [Q7CQI7]
  • Domain organization of [Q7CQI7_SALTY] by SWISSPFAM
    • Other resources with information on 2RD1
  • Community annotation for 2RD1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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