2RDB Oxidoreductase date Sep 21, 2007
title X-Ray Crystal Structure Of Tolueneo-Xylene Monooxygenase Hy I100w Mutant
authors L.J.Murray, R.Garcia-Serres, M.S.Mccormick, R.Davydov, S.Naik, B.M.Hoffman, B.H.Huynh, S.J.Lippard
compound source
Molecule: Toluene, O-Xylene Monooxygenase Oxygenase Subunit
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Stutzeri
Organism_taxid: 316
Strain: Ox1
Gene: Toua
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet22
Expression_system_plasmid: Pet22bea

Molecule: Toluene, O-Xylene Monooxygenase Oxygenase Subunit
Chain: B
Engineered: Yes

Organism_scientific: Pseudomonas Stutzeri
Organism_taxid: 316
Strain: Ox1
Gene: Toue
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet22
Expression_system_plasmid: Pet22bea

Molecule: Toluene, O-Xylene Monooxygenase Oxygenase Subunit
Chain: C
Engineered: Yes

Organism_scientific: Pseudomonas Stutzeri
Organism_taxid: 316
Strain: Ox1
Gene: Toub
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet22
Expression_system_plasmid: Pet22bea
symmetry Space Group: P 31 2 1
R_factor 0.217 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.420 182.420 67.962 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand FE, GOL, MPO, P6G enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • monooxygenase activity


  • Primary referenceDioxygen Activation at Non-Heme Diiron Centers: Oxidation of a Proximal Residue in the I100W Variant of Toluene/o-Xylene Monooxygenase Hydroxylase., Murray LJ, Garcia-Serres R, McCormick MS, Davydov R, Naik SG, Kim SH, Hoffman BM, Huynh BH, Lippard SJ, Biochemistry. 2007 Dec 25;46(51):14795-809. Epub 2007 Nov 29. PMID:18044971
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (158 Kb) [Save to disk]
  • Biological Unit Coordinates (2rdb.pdb1.gz) 151 Kb
  • Biological Unit Coordinates (2rdb.pdb2.gz) 297 Kb
  • LPC: Ligand-Protein Contacts for 2RDB
  • CSU: Contacts of Structural Units for 2RDB
  • Likely Quarternary Molecular Structure file(s) for 2RDB
  • Structure Factors (616 Kb)
  • Retrieve 2RDB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RDB from S2C, [Save to disk]
  • Re-refined 2rdb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RDB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RDB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RDB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rdb_B] [2rdb] [2rdb_C] [2rdb_A]
  • SWISS-PROT database: [O87798] [O87799] [O87802]
  • Domain organization of [O87798_PSEST] [O87799_PSEST] [O87802_PSEST] by SWISSPFAM
  • Other resources with information on 2RDB
  • Community annotation for 2RDB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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