2RFX Immune System date Oct 02, 2007
title Crystal Structure Of Hla-B5701, Presenting The Self Peptide Lsspvtksf
authors J.K.Archbold, W.A.Macdonald, J.Rossjohn, J.Mccluskey
compound source
Molecule: Hla Class I Histocompatibility Antigen, B-57 Alph
Chain: A
Synonym: Hla-B5701 Heavy Chain, Mhc Class I Antigen B57,
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Hla-B
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Beta-2-Microglobulin
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: B2m
Expression_system: Escherichia Coli
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet

Molecule: Lsspvtksf
Chain: C
Engineered: Yes

Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.
symmetry Space Group: P 1 21 1
R_factor 0.209 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.844 49.029 70.666 90.00 100.70 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B
  • cellular response to iron io...

  • Primary referenceHuman leukocyte antigen class I-restricted activation of CD8+ T cells provides the immunogenetic basis of a systemic drug hypersensitivity., Chessman D, Kostenko L, Lethborg T, Purcell AW, Williamson NA, Chen Z, Kjer-Nielsen L, Mifsud NA, Tait BD, Holdsworth R, Almeida CA, Nolan D, Macdonald WA, Archbold JK, Kellerher AD, Marriott D, Mallal S, Bharadwaj M, Rossjohn J, McCluskey J, Immunity. 2008 Jun;28(6):822-32. PMID:18549801
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (2rfx.pdb1.gz) 68 Kb
  • LPC: Ligand-Protein Contacts for 2RFX
  • CSU: Contacts of Structural Units for 2RFX
  • Likely Quarternary Molecular Structure file(s) for 2RFX
  • Structure Factors (108 Kb)
  • Retrieve 2RFX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RFX from S2C, [Save to disk]
  • Re-refined 2rfx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RFX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RFX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RFX, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rfx] [2rfx_A] [2rfx_B] [2rfx_C]
  • SWISS-PROT database: [P18465] [P61769]
  • Domain organization of [1B57_HUMAN] [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 2RFX: [IGc1 ] by SMART
  • Other resources with information on 2RFX
  • Community annotation for 2RFX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science