2RGY Transcription Regulator date Oct 05, 2007
title Crystal Structure Of Transcriptional Regulator Of Laci Famil Burkhoderia Phymatum
authors R.Agarwal, S.K.Burley, S.Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Transcriptional Regulator, Laci Family
Chain: A
Fragment: Residues 81-359
Engineered: Yes
 Organism_scientific: Burkholderia Phymatum
Organism_taxid: 391038
Strain: Stm815
Gene: Bphydraft_4885
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet
Expression_system_plasmid: Psgx3(Bc)
symmetry Space Group: C 2 2 21
R_factor 0.210 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.543 118.777 85.439 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand MSE enzyme
Gene BPHYDRAFT
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (2rgy.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 2RGY
  • CSU: Contacts of Structural Units for 2RGY
  • Likely Quarternary Molecular Structure file(s) for 2RGY
  • Structure Factors (140 Kb)
  • Retrieve 2RGY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RGY from S2C, [Save to disk]
  • Re-refined 2rgy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 2RGY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RGY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RGY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rgy] [2rgy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 2RGY
  • Community annotation for 2RGY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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