2RI3 Transcription date Oct 10, 2007
title Crystal Structure Of The 3-Mbt Repeats From Human L3mbtl1 Wi Point Mutation
authors H.Li, D.J.Patel
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein
Chain: A
Fragment: Repeates Mbt-1, Mbt-2, Mbt-3; Residues 206-519
Synonym: L3, Mbt-Like, L3, Mbt Protein Homolog, H-L3, Mbt P L3, Mbt, L3mbtl1;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L3mbtl, Kiaa0681, L3mbt
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p
symmetry Space Group: P 21 21 2
R_factor 0.213 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.001 90.732 58.498 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CML, PEG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Lower Lysine Methylation State-Specific Readout by MBT Repeats of L3MBTL1 and an Engineered PHD Finger., Li H, Fischle W, Wang W, Duncan EM, Liang L, Murakami-Ishibe S, Allis CD, Patel DJ, Mol Cell. 2007 Nov 30;28(4):677-91. PMID:18042461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk]
  • Biological Unit Coordinates (2ri3.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 2RI3
  • CSU: Contacts of Structural Units for 2RI3
  • Likely Quarternary Molecular Structure file(s) for 2RI3
  • Structure Factors (392 Kb)
  • Retrieve 2RI3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RI3 from S2C, [Save to disk]
  • Re-refined 2ri3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RI3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RI3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RI3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2ri3_A] [2ri3]
  • SWISS-PROT database: [Q9Y468]
  • Domain organization of [LMBL1_HUMAN] by SWISSPFAM
  • Domain found in 2RI3: [MBT ] by SMART
  • Other resources with information on 2RI3
  • Community annotation for 2RI3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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