2RJD Transcription date Oct 14, 2007
title Crystal Structure Of L3mbtl1 Protein
authors A.Allali-Hassani, Y.Liu, N.Herzanych, H.Ouyang, F.Mackenzie, L.Cr P.Loppnau, I.Kozieradzki, M.Vedadi, J.Weigelt, M.Sundstrom, C.H.Arrowsmith, A.M.Edwards, A.Bochkarev, J.R.Min, Structural G Consortium (Sgc)
compound source
Molecule: Lethal(3)Malignant Brain Tumor-Like Protein
Chain: A
Fragment: Residues 200-530
Synonym: L(3)Mbt-Like, L(3)Mbt Protein Homolog, H-L(3)Mbt P L(3)Mbt, L3mbtl1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: L3mbtl, Kiaa0681, L3mbt
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a-Mhl
symmetry Space Group: P 21 21 2
R_factor 0.202 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
85.518 94.195 59.009 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.65 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceL3MBTL1 recognition of mono- and dimethylated histones., Min J, Allali-Hassani A, Nady N, Qi C, Ouyang H, Liu Y, Mackenzie F, Vedadi M, Arrowsmith CH, Nat Struct Mol Biol. 2007 Nov 18;. PMID:18026117
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (2rjd.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (2rjd.pdb2.gz) 122 Kb
  • CSU: Contacts of Structural Units for 2RJD
  • Likely Quarternary Molecular Structure file(s) for 2RJD
  • Structure Factors (830 Kb)
  • Retrieve 2RJD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RJD from S2C, [Save to disk]
  • Re-refined 2rjd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RJD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RJD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RJD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rjd_A] [2rjd]
  • SWISS-PROT database: [Q9Y468]
  • Domain organization of [LMBL1_HUMAN] by SWISSPFAM
  • Domain found in 2RJD: [MBT ] by SMART
  • Other resources with information on 2RJD
  • Community annotation for 2RJD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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