2RJK	Cytokine	date	Oct 15, 2007
title	Crystal Structure Of Human Tl1a Extracellular Domain C95s Mu
authors	C.Zhan, Q.Yan, Y.Patskovsky, W.Shi, U.A.Ramagopal, R.Toro, J.Bonan S.G.Nathenson, S.C.Almo
compound		source
Molecule: Tnf Superfamily Ligand Tl1a Chain: A Fragment: Human Tl1a Extracellular Domain Synonym: Tumor Necrosis Factor Ligand, Superfamily, Member Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Gene: Tnfsf15 Expression_system: Escherichia Coli Expression_system_strain: Bl21-Ai Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-28a
symmetry	Space Group: P 41 3 2	R_factor 0.212 R_Free 0.265
crystal cell	length a length b length c angle alpha angle beta angle gamma 118.226 118.226 118.226 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
Gene Ontology	Chain Function Process Component A
Primary reference	Biochemical and structural characterization of the human TL1A ectodomain., Zhan C, Yan Q, Patskovsky Y, Li Z, Toro R, Meyer A, Cheng H, Brenowitz M, Nathenson SG, Almo SC, Biochemistry. 2009 Aug 18;48(32):7636-45. PMID:19522538

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk] Biological Unit Coordinates (2rjk.pdb1.gz) 72 Kb CSU: Contacts of Structural Units for 2RJK Likely Quarternary Molecular Structure file(s) for 2RJK Structure Factors (193 Kb) Retrieve 2RJK in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 2RJK from S2C, [Save to disk] Re-refined 2rjk structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 2RJK in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 2RJK

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 2RJK, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [2rjk_A] [2rjk] SWISS-PROT database: [O95150] Domain organization of [TNF15_HUMAN] by SWISSPFAM Domain found in 2RJK: [TNF ] by SMART

Other resources with information on 2RJK

Community annotation for 2RJK at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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