2RJL Cytokine date Oct 15, 2007
title Crystal Structure Of Human Tl1a Extracellular Domain C95sc1
authors C.Zhan, Y.Patskovsky, Q.Yan, W.Shi, R.Toro, J.Bonanno, S.G.Nathens S.C.Almo
compound source
Molecule: Tnf Superfamily Ligand Tl1a
Chain: A
Fragment: Human Tl1a Extracellular Domain
Synonym: Tumor Necrosis Factor Ligand, Superfamily, Member
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Gene: Tnfsf15
Expression_system: Escherichia Coli
Expression_system_strain: Bl21-Ai
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-28a
symmetry Space Group: P 41 3 2
R_factor 0.209 R_Free 0.244
crystal
cell
length a length b length c angle alpha angle beta angle gamma
117.584 117.584 117.584 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBiochemical and structural characterization of the human TL1A ectodomain., Zhan C, Yan Q, Patskovsky Y, Li Z, Toro R, Meyer A, Cheng H, Brenowitz M, Nathenson SG, Almo SC, Biochemistry. 2009 Aug 18;48(32):7636-45. PMID:19522538
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (30 Kb) [Save to disk]
  • Biological Unit Coordinates (2rjl.pdb1.gz) 72 Kb
  • CSU: Contacts of Structural Units for 2RJL
  • Likely Quarternary Molecular Structure file(s) for 2RJL
  • Structure Factors (266 Kb)
  • Retrieve 2RJL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RJL from S2C, [Save to disk]
  • Re-refined 2rjl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RJL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RJL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RJL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rjl] [2rjl_A]
  • SWISS-PROT database: [O95150]
  • Domain organization of [TNF15_HUMAN] by SWISSPFAM
  • Domain found in 2RJL: [TNF ] by SMART
  • Other resources with information on 2RJL
  • Community annotation for 2RJL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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