2RJR Isomerase date Oct 15, 2007
title Substrate Mimic Bound To Sgtam
authors T.J.Montavon, C.V.Christianson, S.D.Bruner
compound source
Molecule: Tyrosine Aminomutase
Chain: A, B
Fragment: Tyrosine Aminomutase
Synonym: Putative Ammonia Lyasetransferase
Ec: 5.4.3.6
Engineered: Yes
Organism_scientific: Streptomyces Globisporus
Organism_taxid: 1908
Gene: Sgcc4
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 2
R_factor 0.173 R_Free 0.212
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.245 145.648 75.114 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 295, MDO enzyme Isomerase E.C.5.4.3.6 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDesign and characterization of mechanism-based inhibitors for the tyrosine aminomutase SgTAM., Montavon TJ, Christianson CV, Festin GM, Shen B, Bruner SD, Bioorg Med Chem Lett. 2007 Nov 19;. PMID:18078753
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk]
  • Biological Unit Coordinates (2rjr.pdb1.gz) 329 Kb
  • LPC: Ligand-Protein Contacts for 2RJR
  • CSU: Contacts of Structural Units for 2RJR
  • Likely Quarternary Molecular Structure file(s) for 2RJR
  • Structure Factors (1205 Kb)
  • Retrieve 2RJR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RJR from S2C, [Save to disk]
  • Re-refined 2rjr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 2RJR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RJR
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RJR, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rjr] [2rjr_B] [2rjr_A]
  • SWISS-PROT database: [Q8GMG0]
  • Domain organization of [Q8GMG0_STRGL] by SWISSPFAM
  • Other resources with information on 2RJR
  • Community annotation for 2RJR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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