2RLL Membrane Protein date Jul 21, 2007
title Ccr5 Nt(7-15)
authors C.A.Bewley, S.N.Lam
compound source
Molecule: 9-Mer From C-C Chemokine Receptor Type 5
Chain: A
Fragment: Extracellular Domain, Unp Residues 7-15
Synonym: C-C Ckr-5, Cc-Ckr-5, Ccr-5, Ccr5, Hiv-1 Fusion Cor Chemr13, Cd195 Antigen;
Engineered: Yes
 Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized By S Phase Synthesis And Purified By Reverse Phase Hplc.; This S Occurs Naturally In Humans.
methodSolution NMR
ligand TYS enzyme
Primary referenceStructures of the CCR5 N terminus and of a tyrosine-sulfated antibody with HIV-1 gp120 and CD4., Huang CC, Lam SN, Acharya P, Tang M, Xiang SH, Hussan SS, Stanfield RL, Robinson J, Sodroski J, Wilson IA, Wyatt R, Bewley CA, Kwong PD, Science. 2007 Sep 28;317(5846):1930-4. PMID:17901336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (5 Kb) [Save to disk]
  • Biological Unit Coordinates (2rll.pdb1.gz) 3 Kb
  • LPC: Ligand-Protein Contacts for 2RLL
  • CSU: Contacts of Structural Units for 2RLL
  • Retrieve 2RLL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RLL from S2C, [Save to disk]
    • View 2RLL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RLL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RLL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rll] [2rll_A]
  • SWISS-PROT database: [P51681]
  • Domain organization of [CCR5_HUMAN] by SWISSPFAM
    • Other resources with information on 2RLL
  • Community annotation for 2RLL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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