2RNG Antimicrobial Protein date Dec 27, 2007
title Solution Structure Of Big Defensin
authors T.Kouno, N.Fujitani, T.Osaki, S.Kawabata, S.Nishimura, M.Mizuguch T.Aizawa, M.Demura, K.Nitta, K.Kawano
compound source
Molecule: Big Defensin
Chain: A
 Organism_scientific: Tachypleus Tridentatus
Organism_common: Japanese Horseshoe Crab
Organism_taxid: 6853
methodSolution NMR
note 2RNG is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel beta-defensin structure: a potential strategy of big defensin for overcoming resistance by Gram-positive bacteria., Kouno T, Fujitani N, Mizuguchi M, Osaki T, Nishimura S, Kawabata S, Aizawa T, Demura M, Nitta K, Kawano K, Biochemistry. 2008 Oct 7;47(40):10611-9. Epub 2008 Sep 12. PMID:18785751
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (477 Kb) [Save to disk]
  • Biological Unit Coordinates (2rng.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 2RNG
  • Original NMR restraints for 2RNG from PDB
  • Retrieve 2RNG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RNG from S2C, [Save to disk]
    • View 2RNG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 2RNG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RNG, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rng_A] [2rng]
  • SWISS-PROT database: [P80957]
  • Domain organization of [BDEF_TACTR] by SWISSPFAM
    • Other resources with information on 2RNG
  • Community annotation for 2RNG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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