2RPH Dna date May 15, 2008
title Rect-Bound Ssdna
authors T.Masuda, Y.Ito, T.Shibata, T.Mikawa
compound source
Molecule: Dna (5'-D(Dtpdapdcpdg)-3')
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: Nucleotide Synthesis
methodSolution NMR
Primary referenceA non-canonical DNA structure enables homologous recombination in various genetic systems., Masuda T, Ito Y, Terada T, Shibata T, Mikawa T, J Biol Chem. 2009 Oct 30;284(44):30230-9. Epub 2009 Sep 3. PMID:19729448
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (2rph.pdb1.gz) 2 Kb
  • CSU: Contacts of Structural Units for 2RPH
  • Original NMR restraints for 2RPH from PDB
  • Retrieve 2RPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 2RPH from S2C, [Save to disk]
  • View 2RPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 2RPH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 2RPH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [2rph_A] [2rph]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 2RPH
  • Community annotation for 2RPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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